Scaffold Ga0212029_1003537

Overview

Basic Information

• Taxon OID: 3300022063
• Scaffold ID: Ga0212029_1003537
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1618
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010391	Metagenome / Metatranscriptome	304	Y
F033777	Metagenome	176	Y
F078534	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212029_10035375	F010391	N/A	MTEEIFEQLGFERNYVPKEESGDTRDWHYYTLDIGDICIISNSDDEAEKDGWEAYIFDSLTMRVKGAGDLEDLVRILKNNTFE
Ga0212029_10035376	F033777	N/A	MKIERYTQAYEFFVLPCIKFTYDKSLFGFYCVDVIWGRWGLSLHWGYKE
Ga0212029_10035377	F078534	GAG	MKKGHQMSMSRKLEIVRTVLNKSKGLNMLHGEKLVNHIANSIVLYEQYQPSEKDEN