Scaffold Ga0212023_1036824

Overview

Basic Information

• Taxon OID: 3300022061
• Scaffold ID: Ga0212023_1036824
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 680
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014069	Metagenome / Metatranscriptome	266	N
F038858	Metagenome / Metatranscriptome	165	Y
F054358	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212023_10368241	F054358	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKINKMHDDVRVLYDDHAKFANEMDSILLQKKGKLDNAIHV
Ga0212023_10368242	F014069	AGGAGG	METVKAPISERVATKVMPLTKWFVEQYFQTYELMSSDPRFKKLPAYNQTSCIATVIIATNNALDKSRDAKKSAETLQDISKATEERKAVNE
Ga0212023_10368243	F038858	N/A	GEQLVKAFTLPIRVCVGIYNCVEKATPDTLEMPFEIKRKEETNGNSKSTD