Scaffold Ga0212023_1015582

Overview

Basic Information

• Taxon OID: 3300022061
• Scaffold ID: Ga0212023_1015582
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1009
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004404	Metagenome / Metatranscriptome	439	Y
F005611	Metagenome	395	Y
F008684	Metagenome	329	Y
F073754	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212023_10155821	F008684	N/A	MTDKNFDMACQLADDLYFKFIDSLHDDIANEYVVADEDNIGSTKNTEKGSNLYWELESTIKNALDKQIESEE
Ga0212023_10155822	F005611	GAGG	MPKYKVRAEETIYAIYETEINADNKKQAKKIALDTCVYDYKNNDLSNSAGDFTIEEIEEI
Ga0212023_10155823	F004404	AGGAG	MNDNSSYNKLNKTIKDFNDYLAKIKKESELDEHSLAIHYDYDIVPLPDEIIDETNRKDK
Ga0212023_10155824	F073754	AGGA	MSCNNCNNTDENETLYWDNELDKPNMVDYTCLCQSCYNKMATESEDKIKXLY