Scaffold Ga0212023_1000194

Overview

Basic Information

• Taxon OID: 3300022061
• Scaffold ID: Ga0212023_1000194
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4731
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001283	Metagenome / Metatranscriptome	731	N
F026826	Metagenome / Metatranscriptome	196	N
F044367	Metagenome	154	N
F071015	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212023_100019412	F001283	N/A	MTDQEAKEILNKPAICKEAERSVRDMKIKLAKYSGDKTEQTKHLQNLDNLINLAYKQAVEIDSYEELLATYLFKMGEQQAKIRELCELNAMANKIVEL
Ga0212023_10001943	F026826	N/A	MKFQPYIGKQLTRAIKANTTRAERQVVAERHIISVHTLNTVISGERKITDFNEPALTDIIKVAIRNANNNGKTLADYYQQKEAAVATPLNNH
Ga0212023_10001945	F044367	N/A	MKEQILKVGTILMPLGFMVALVDCKVYAAINFVIGFVCLLELIDVKLKEKNKPTS
Ga0212023_10001946	F071015	N/A	MNRLQITFAPKDFTAGSEWLEENSTKLGFSYDEYQDIYESEDMLYNIEKELEASGLKYTL