Scaffold Ga0212023

Basic Information
Taxon OID	3300022061 Open in IMG/M
Scaffold ID	Ga0212023_1000096 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022061 Open in IMG/M

Scaffold ID

Ga0212023_1000096 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6255
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6255

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010604	Metagenome / Metatranscriptome	301	N
F054676	Metagenome / Metatranscriptome	139	N
F081060	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212023_10000963	F054676	AGG	MAITIQNQPNQLHVRPAFAPIEYLLSSTSTAQPGFKIVCKIYLNPSGANTLISTQQINVRPSTTQAILSIQDVVKSFAPVYSYMTKQASNVNNDTLNQFRVTFQEYYNGALQGSISTSDTIYAYSASPKYIQFATNEWLSYYLSSFFANRKFLSGFDNIIPVINSFKSSDPWLKVKSTQKVQVQWLERNVTLPFKMWFKTLDANFNQISLSISDLGTSTASYNGFNVGRQEANSSSWNTPIVWTNAKYYAVGIVDDATSELASYCYLYELDECDTNYTPYELHWLNRWGGFDSFVFDGKSNQTTQVNKTFAKYSPDRISGTSLNYSTSAQRTRAFNTATSEIYSLNSRLLQDFEVSGLEDLVTSPEVYWRSEAGFVSVNVSGNTYQHAKSENGLVYSLALDMTIDNSDERQW
Ga0212023_10000964	F081060	GAG	MQNKLYANLDKYWQTVVDDLVQSLKDVGRYASGNTAQAIGDGNAQPVAITANGFKITIAMPDYYEYLDEGVSGAKNNTGISRFKYTNKMPPIKAIRKFMLNRGINAPRTSNTKSGKRQDAEKIRNGIAFAIARSIFNNGTKRTDFYSNVINDKKLIAFEQMLLTQYSNYVIELIKII
Ga0212023_10000966	F010604	N/A	MEHIKLSKMTVGQYQLLNEIDGELPVMEQNIYAVAAIKDITYEEASKVKLKDFAVMIAELGEFNIKQLEKLKINSRVILNGSVYHIEHKPEKLTSGQLLDIINIRSKYQGEGVKVMDLLLAAISKPEGKNYGDDNLSLNERAALIRGMELDKVWNIFVFFWNLWNDYLNNTEDSLSKWMRDTLKMTREILGNDGDSLA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212023_1000096

Overview

Ecosystem & Geography

Associated Families

Sequences