Scaffold Ga0224905_100143

Overview

Basic Information

• Taxon OID: 3300022058
• Scaffold ID: Ga0224905_100143
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1316
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028777	Metagenome / Metatranscriptome	190	Y
F057387	Metagenome / Metatranscriptome	136	Y
F081365	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224905_1001432	F028777	GAG	MLGLFARNKHSFTEMLFLEKDISEFRKIRYILEVEGRICSLDPEFSTSGNLRKAVHRLNRDYNSKIYKEECNCNFKVKGKLNMDGTPRKHYAYIKDWAS
Ga0224905_1001433	F057387	AGGA	MSKLSKPLQAFWDNQIAHDNVKAAPFSGNCMFCTKAITEKDKDHSVCNTCWADLGDDE
Ga0224905_1001435	F081365	N/A	MMDGIIGTVVSIVGGDMVNANNRRDFKAEEYNLYDVRKARPFWNQVCAANNWQVIKDEEDFAEDYVCKILNNLYVMELQVVGYWHN