Scaffold Ga0224905_100022

Overview

Basic Information

• Taxon OID: 3300022058
• Scaffold ID: Ga0224905_100022
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2393
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F002192	Metagenome / Metatranscriptome	585	Y
F021434	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224905_1000222	F002192	N/A	MHQVLLYSSLSIAILALFFALYAGVRVGQMIQASKDLDWTAVANLTGDIASTKKTIQTLNNRINGMHSPKLADQELMLQLLQNKEKPRPNGHMTNSVGKWV
Ga0224905_1000224	F000613	AGGAG	MPIVKKKVSVASGATSDQILSGTTYEYVDQGTRIVVAAAVDTAGTAAADTTMDFTVNNAEFAKDASVSTLVTGQPFGWNNTGYVMSDMVTTGAVRNRPVIQFKNGTSGTRTIDVAVFIGN
Ga0224905_1000225	F021434	N/A	DVGRNILGPIGNIFSSPALTPFITPQSQGQPAQPSQGGQMGQESSRSGTQEAFIGGLPNVLGQAARFLRTPGGQIGTGLISGIGASMLGGSTPGMRITRKMKSQYRSVLNLAGGNYQLAADMIGVSDDMFIAVMLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRRAPMKRATTTLIKN