Scaffold Ga0212025_1003476

Overview

Basic Information

• Taxon OID: 3300022057
• Scaffold ID: Ga0212025_1003476
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1937
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.149325
  • Long. (^o): -75.288339

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025941	Metagenome / Metatranscriptome	199	Y
F035745	Metagenome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212025_10034761	F035745	N/A	SDSQTVGDGAWPVQVTRTAADGVDQCQLESDALDESLSQLDKLMPRIRDQAERLYMCRRSMALSEAADSGDHADALVLQTTLVELEAYGGRLPDLISGLKTDGGSLTESI
Ga0212025_10034764	F025941	AGGAGG	MALPDYIQITQGTAIIWGESGATGPTVTHNLSVDALANGAARQGDYADLGANWDDEYNVYLFVETGTAPTAGTTVEAYLVSTWDASYWPAKVTGSDSAYTLGTSDANLRQAGPPVVSLVATADANTVLGQAPSIWRPRGRYVAPIIDNNLGQAFRDETTATDNGTRLILIPRRLVIND