Scaffold Ga0212030_1014298

Overview

Basic Information

• Taxon OID: 3300022053
• Scaffold ID: Ga0212030_1014298
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1022
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F005817	Metagenome / Metatranscriptome	389	N
F082713	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212030_10142982	F003647	N/A	MLIREWKLADIKNRASNKAFAKVTILTLDIETYKRDLREGNIGGVTYEEFEQVLEGYETELKIWNYITELIEKQ
Ga0212030_10142983	F005817	N/A	MRSNLLTRLKPEYKRGLEDNKLRYPAMINDLEFLLSQQFYYNDLTVNQVLNIFVFSDMEYLDRKNFDWRYGEDVFNVENNVA
Ga0212030_10142984	F082713	N/A	MKIKGLTEQDCAFVYYVLRDWSQNHENYEEQDVDDVYEIAKKFKNN