Scaffold Ga0212030_1005465

Overview

Basic Information

• Taxon OID: 3300022053
• Scaffold ID: Ga0212030_1005465
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1435
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005373	Metagenome	403	N
F005611	Metagenome	395	Y
F023451	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212030_10054652	F023451	AGGAG	MKKQKWIGFKEPKFIGIDFDCKGNPLIEWQEALKLKIDRDTVGYDFKVVAYKKVQSCMED
Ga0212030_10054653	F005611	GAGG	MKSKKYKVRAEETIYAIYETEIEAKNKKEAEKIALDTCASDYLSSDWSNSAGDFTIEDIEEIEEXKNKNG
Ga0212030_10054655	F005373	GAGG	MNEGLENIKQIEDLENKVKTLSDHLAGMCCQADEDTPSEYRTEHFRSTMDDAYEYLEKIGYFKKXKNIK