Scaffold Ga0212030_1002101

Overview

Basic Information

• Taxon OID: 3300022053
• Scaffold ID: Ga0212030_1002101
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1938
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002146	Metagenome	590	Y
F004404	Metagenome / Metatranscriptome	439	Y
F005611	Metagenome	395	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212030_10021012	F002146	GGAGG	MIKNILNFLDYVLFLGLFYIVYLGLKYSVQIEQLIIELKGGAIXKQLIFLKNCALII
Ga0212030_10021015	F005611	N/A	MPKYKIRAEETIYAIYETEINADNKKQAKKIALDTCVYDYKNNDLSNSAGDFTIEEIEEI
Ga0212030_10021016	F004404	AGGAG	MNDDSSYNKLNKTIKDFNDYLAKIKKELDLNNHDLAIHYDYDLMPLPDKVIDEANRKDK