Scaffold Ga0196883_1004470

Overview

Basic Information

• Taxon OID: 3300022050
• Scaffold ID: Ga0196883_1004470
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1613
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F073499	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196883_10044703	F073499	AGGAG	MMTEQQIEQWIRDNPWKANVIYPAGGIGFMMFLMYFFMQVIDSFLTGSFI
Ga0196883_10044704	F001655	GAGG	MKQPENDHTKMFGNDGSIHNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLFENFEASVRRTAKALAESYTYWPEGYVHVQTIINEEYVNII
Ga0196883_10044705	F002858	AGAAG	MAIDEKSIYLVDGGDYQIYCFGYTQARTVTNDIMRRNPWGGIPFVFEQDQLEVSFDDKGNVVMPRAVLDKILFLASDELPEGEG