NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196883_1002435

Scaffold Ga0196883_1002435


Overview

Basic Information
Taxon OID3300022050 Open in IMG/M
Scaffold IDGa0196883_1002435 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2109
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp. JV274(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061677Metagenome131N
F064578Metagenome128N
F091643Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0196883_10024352F061677N/AMSKEKQFSKTIILCSLLDLAMEELAMSQVFKRRTNLYKGVLERELKRQQLAVEIECGKQVAEDGLAAQNQLTLQVDYILDAIFGIKENKELVKSIEKHLLK
Ga0196883_10024353F091643N/AMEAGSKVKVYLGNVACCYGIATGRAKKMNGVTIYELQECDPFDTWDADYFRDANEVSFDIKFAKEIKTYNNGKRVYLNTGTFNYYKMKKECFKFEQQTLF
Ga0196883_10024354F064578N/AMTRAKTEAFIQGITDGTFQGDAATIYNLIQDKHVMTLPEISVILDKSLNQFSGRISELLDAGLIKEMKGAKYSLFRITQSDQERYECAKMRHNEKIEKLRKKADELGYFLVKKMW

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