NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196883_1001670

Scaffold Ga0196883_1001670


Overview

Basic Information
Taxon OID3300022050 Open in IMG/M
Scaffold IDGa0196883_1001670 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2475
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y
F026889Metagenome / Metatranscriptome196N
F056586Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0196883_10016701F023856GGAGGMRCRACDRILEESELTRKDTHGNFLDLCGICLSATANAGVDTETMEYYQYEIFT
Ga0196883_100167010F026889GAGGMNNVIEEYLALVERTVYHSDLDAFDALEQLEEDYPELADLVYQSAGPLAYDIQNNEVTS
Ga0196883_10016702F024320AGGGGGMTFEEYEQGYYSGDSEDPSGPPEDPETHAMIEHLVEFDTEMYRLDSRRKYKGLSYKHLETLMVELHGREWRDAL
Ga0196883_10016706F056586AGGAGGVKRTYQVIMTKIYEVKVEAESREQAEEIFDNFGDWEELLRVHTLDIEPADYLTLREED
Ga0196883_10016708F008883AGGAGMNFGRYTIWYNHEDHVWDIYDGNKGYKYPEYTINNYSRLLCGLRDRFGFLDTDRNHRRFWRVMRWWSKLRHGRR

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