Scaffold Ga0196883_1001176

Overview

Basic Information

• Taxon OID: 3300022050
• Scaffold ID: Ga0196883_1001176
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2870
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002586	Metagenome	546	N
F009077	Metagenome / Metatranscriptome	323	Y
F064509	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196883_10011761	F002586	N/A	MIKVELKPIDVELALDTANKRFIGNLKMNKGFSYGYNKGLKGQLTDGFLGALGEVAYAKAMNQFYNGSYTDNLERYNDSDFQNNIEIRTQEKRNYNFLLIRPGEKKGKYILIIKDNDKDFNFSIMGWFPFVDDMPERLTNFGHYDRPAAYKIDIKELYNMNDL
Ga0196883_10011762	F064509	N/A	MTDKTNIYGDYRICCKCEMKADVVENGNDLCASCYFKHHTNTTLEEYEKRNKEIDIERERINYKKDKHDKS
Ga0196883_10011766	F009077	AGG	MKNKDFESITKDLEKRNPGKNFYDFQDFGECQAKIDNDIIPKVEIVELPKRYFKRLIKFIKAK