NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196883_1000907

Scaffold Ga0196883_1000907


Overview

Basic Information
Taxon OID3300022050 Open in IMG/M
Scaffold IDGa0196883_1000907 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3214
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025968Metagenome / Metatranscriptome199Y
F048639Metagenome148Y
F077195Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0196883_10009073F077195N/AMNNYIPTLEGDEAEEFIRKADENVRLMRQRRCKNHVWRKDYLNGGKKCQVCGKAKEEVKRSKDVEE
Ga0196883_10009077F048639N/AMTETEECYYNAYQLLIGDTTYDKLAEQEVFYLPENHEDPDVVLEYYESIEDYEKCKKIIERNY
Ga0196883_10009078F025968N/AMIAPQEHVERVLTRCFEVYPPNGKEHRKFFKNLVKQGSMPENMASMIVRIIENPNCVYIVKADGTLKILDSAE

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