Scaffold Ga0196883

Basic Information
Taxon OID	3300022050 Open in IMG/M
Scaffold ID	Ga0196883_1000888 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022050 Open in IMG/M

Scaffold ID

Ga0196883_1000888 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3238
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3238

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025275	Metagenome	202	Y
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196883_100088810	F029600	N/A	MKYWNGEGQYQDLFDKYWKALVPESGRADTDAGNALRAIARINHDVFNNGAGNIVNESMEVDDDGEWYTLYEVERWWDEFFEELCDYTGLDVDRLKRKIIEYVQYDKDYGLSSLIDDYIDHIILKIDNQLVTK
Ga0196883_100088811	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDKAMDAKQKSLARLMETDHEEIVSSTDGMQDIIIIDDDNSEHEIVKIIELKPTWPENKDVREYLVWDQMNCEAPYDGDYLPTDMAVIKDLCERQEAVADTFDVEVFHEFVNDLWYGGAAMFDADDICIYYFKLPKLID
Ga0196883_10008884	F018534	N/A	MALPTLTDFLTSWDKLIVTGMTPERNDSVMTVAPNGTTVAIEYRHQINAHNGETSTVAYLVATDSNGNRITLRNQAYGCFGDEEKQFHQWFAKKMAGAMELDARRRRDLSDGIDMILAS
Ga0196883_10008886	F020115	N/A	MTYEQFELLRQWADRVANTANDTDTNIRAIDLVHDIAGILANDEHFLPRL
Ga0196883_10008888	F009699	N/A	MMTDKEAQAFMQKVDSSAQFWQELHDEDAPTMQIQGNTVPRCLYNLMVTKRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAIHSELIGRLKEQDDAGQE
Ga0196883_10008889	F032639	N/A	MLDKNKKLINEDGFYAGSELMWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTIVYMIEEGQLKAEEQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196883_1000888

Overview

Ecosystem & Geography

Associated Families

Sequences