NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196883_1000807

Scaffold Ga0196883_1000807


Overview

Basic Information
Taxon OID3300022050 Open in IMG/M
Scaffold IDGa0196883_1000807 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3379
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004343Metagenome / Metatranscriptome442Y
F032084Metagenome181N
F032266Metagenome180Y
F038638Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0196883_10008072F004343GAGGMTQHREMIEEAKRLLNSKRENIPSMSKNFGKDYWLLTYPCGKIVKTYEDKRKKDVIIQES
Ga0196883_10008075F038638AGGMSYDIAQFKYINHMREHYGLIGEPEYPCRTRSHQDENGNWVLVSPQGLKMAKIFKNGDII
Ga0196883_10008077F032084AGGAGMRLILSEKDKHIIVTVLGDYATEIDRQATKSKEDLDTYKRIENIISQVAFGFDKEEKQE
Ga0196883_10008079F032266AGGMSDTVKGVVFIDDAINLSHEELKKKFKEAVKNNEINHFEIQTRGKE

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