Scaffold Ga0196883_1000807

Overview

Basic Information

• Taxon OID: 3300022050
• Scaffold ID: Ga0196883_1000807
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3379
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F032084	Metagenome	181	N
F032266	Metagenome	180	Y
F038638	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196883_10008072	F004343	GAGG	MTQHREMIEEAKRLLNSKRENIPSMSKNFGKDYWLLTYPCGKIVKTYEDKRKKDVIIQES
Ga0196883_10008075	F038638	AGG	MSYDIAQFKYINHMREHYGLIGEPEYPCRTRSHQDENGNWVLVSPQGLKMAKIFKNGDII
Ga0196883_10008077	F032084	AGGAG	MRLILSEKDKHIIVTVLGDYATEIDRQATKSKEDLDTYKRIENIISQVAFGFDKEEKQE
Ga0196883_10008079	F032266	AGG	MSDTVKGVVFIDDAINLSHEELKKKFKEAVKNNEINHFEIQTRGKE