Scaffold Ga0196883_1000332

Overview

Basic Information

• Taxon OID: 3300022050
• Scaffold ID: Ga0196883_1000332
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4970
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024320	Metagenome / Metatranscriptome	206	Y
F026889	Metagenome / Metatranscriptome	196	N
F039151	Metagenome / Metatranscriptome	164	N
F056586	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196883_100033215	F039151	N/A	MLHTKHITLTDATEQTLFTIPTGYTIHIVYIFIANHGGSTNQVSLWWETGGVDQMYFFDSTSIGAGNKEILGGQNDKGIFVLHNGDTVKTQASSATGQMEVAVTFELLERPTAFSNFNGS
Ga0196883_10003323	F024320	AGGGGG	MTFEEYEQGYYSGDSEDNSGPPEDPETHAMVEHLVEFDTEMYRLDSRRKYKGLSYRHLERLMIELHGEEWRDAL
Ga0196883_10003325	F056586	AGGAGG	VKHTYQVIMTKVYEVKVEAESREQAEEIFDNFGDWEELLRVHTLDVEPADYLTLREED
Ga0196883_10003328	F026889	GGAG	MNNVIQEYLALVERTVYHSDLDAFDALEQLEEDYPELADLVYQSAGPLAYDIQNNEVI