Scaffold Ga0196883_1000157

Overview

Basic Information

• Taxon OID: 3300022050
• Scaffold ID: Ga0196883_1000157
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6980
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004787	Metagenome / Metatranscriptome	423	Y
F037741	Metagenome / Metatranscriptome	167	Y
F081292	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196883_10001572	F037741	AGG	MPELGLRLSIGEVDADSIIGPPIGGPPAPDGVIQTEAEDFLLVEAGQFLAFD
Ga0196883_10001574	F004787	N/A	MFVLPTFGLGVVASPLSVFDPDLTFPTIQVFDTEAEFINQTDAPNYTIVHAKDTDKLYVYDGAKWVVYNQD
Ga0196883_10001577	F081292	GAG	MAPNKQSEGLSESSSARVNVQFAIKIIVGVATAVWCWSELTNRMAAMELQVSRVSHESTLLGDLSARMMHLEKFAEQAKDDLDHLVEMQDAPITSDYQQFERLKYLEKEVDRLRFRLDW