Basic Information | |
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Taxon OID | 3300022050 Open in IMG/M |
Scaffold ID | Ga0196883_1000100 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8945 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (15.79%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F061677 | Metagenome | 131 | N |
F061811 | Metagenome | 131 | N |
F064578 | Metagenome | 128 | N |
F079882 | Metagenome | 115 | N |
F091643 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0196883_100010010 | F079882 | AGAAG | MATIKQISLIEAQMAIFVIKKLLQKVDDEAISQAISKLKDEDFEELVNILIWLGYEEKTINQILK |
Ga0196883_100010013 | F061811 | N/A | MDIKKLTDNELSTLIKECRKELEQRKQSLEDVLLEDDFQKYKSKYARLTLFYDFCRGVYSVTEGQLKEKNQSKKKRNIRNAVINYLLSEGFSHQDIVDEFDLARTSLSSPISYHEKYYKLDKNYTDIYEDVKQFFED |
Ga0196883_10001002 | F064578 | N/A | MTRAKTEAFIQGITDGTFQGDAATIYNLIKDKHVMTLPEISVILDKSLNQFSGRISELLDAGLIKEMKGEKYSLFRITQSDQERYECAKMRHDEKIEKLRKKADELGYFLVKKMW |
Ga0196883_10001004 | F091643 | N/A | MEAGSKVKVYLGNVACCYGITTGKAKKMNGVTIYELQECNPFDTWDADYFRDANEVSFDIKFAKEIKTYNNGKRVYLNTGTFNYYKMKKECFKYEQQTLF |
Ga0196883_10001005 | F061677 | N/A | MFQVRTTNTILRDMSNERQFSKTIVLCSLLDLAMEELAMSKEFKRRTKLYKGVLERELKRQQLAVEIECGKQVADDGLAAQNQLTLQVDYILDVIFGITENKELVKSIEEHLMGD |
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