Scaffold Ga0196883_1000057

Overview

Basic Information

• Taxon OID: 3300022050
• Scaffold ID: Ga0196883_1000057
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11719
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005945	Metagenome	385	Y
F010465	Metagenome	303	Y
F054687	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196883_100005711	F010465	GAG	MKEILLDPIDMTEELMFHIFNNDMNRQLDGRWLDLYLSLQLYKEHLEKLEEE
Ga0196883_10000573	F005945	N/A	VIVYVLLQVMNINDQTDTFQYELAKLIYRFKREYDLNDYTIAGCLDFAKLSVLTETDDVIFEGVDDLVEDDTDETFDPSF
Ga0196883_10000579	F054687	AGG	VMNITMTDNLTDPSNLSTLDEPSLQTLIDHYLSVKERLPDNLRVRDRLVELQQELLNRKPVSTIEGVIRQTTDNPINK