Scaffold Ga0196883_1000007

Overview

Basic Information

• Taxon OID: 3300022050
• Scaffold ID: Ga0196883_1000007
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28224
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (18.18%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022895	Metagenome / Metatranscriptome	212	N
F036720	Metagenome / Metatranscriptome	169	N
F060729	Metagenome	132	Y
F060933	Metagenome / Metatranscriptome	132	N
F061811	Metagenome	131	N
F064578	Metagenome	128	N
F068898	Metagenome / Metatranscriptome	124	N
F076041	Metagenome	118	N
F079882	Metagenome	115	N
F090102	Metagenome	108	N
F091643	Metagenome	107	N
F097404	Metagenome / Metatranscriptome	104	N
F101256	Metagenome / Metatranscriptome	102	N
F105261	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196883_10000071	F105261	N/A	MATPTISPNTYAGKDLEGIIAQSVLRGRTIENGLISVHTDIDSRAVVKTMANTITVQDSVAAFNSAGSMTLGEKYLDPKKFMEAVEFDYQSLNGTWYASQQPRGRGGDFVPPATIEEALIEQQALIRSKFIDASIWRGSVAAGQLSKITVSASSNVVTGLIPLMEAGSDVSKLDSDKVAVTAFTKASPAVLTVASTF
Ga0196883_100000711	F090102	GGA	MNEYRITANGKEKKIVKLPTGRHEVTLEQWNNAYKYVELAVEANRLFEEGKLEKSQAKVIESMCGTIAALGEGITYEELLNVEFNKINNLFLIQFGWLSEEKPKRNFKIKGKKFSVPKFEQGTCGDFMDVMSLLAMHEEYNDAEKGLLIAAVYMRNGEYYQDLEEINQRIEFLKKYGRMDLFYSAAFFLLSSLRSYKIDTQRHSAVVREMEKLTSTLVSWATILFSQVSQRLESFRTT
Ga0196883_100000719	F061811	N/A	MDIQKLTDSELSTLIKECRLELEQRKQSLEDVLLEDDFQKYKSKYARLTLFYDFCRGVYSVTESELKEKNQSKKKRNIRNAVINYLLSEGFSHQDIVDEFDLARTSLSSPISYHEKYYKLDKNYTDIFEDVKQFFED
Ga0196883_100000722	F079882	GAG	MATIKQISLIEPQMAIFVIKKLLHQVNDEAISQAISKLKDEDFEELVNILMWLGYEEKTINQILK
Ga0196883_100000727	F091643	N/A	MEAGSKVKVYLGNVAACYGIATGRAKEMNGVTIYELKECEPFQIEEADHFRDANQVSFDIKFAKEIKTYNDMERFYVNISTLNYFKLKKECFKFEQQTLF
Ga0196883_100000728	F064578	N/A	MTRAKTEAFIQGITDGTFQGDAATIYNLIRDKHVMTLPEISVILDKSLNQFSGRISELLDAGLIKEMKGEKYSLFRITQSDQERYECAKIRHDEKIEKLRKKADELGYFLVKKMW
Ga0196883_100000737	F060729	N/A	MKLAELKEKIYELNLKEFDGMHLGSGTILDAQKFVQNHITFLESNPNNSTFLLYYNRLFEFYNKTQNNEM
Ga0196883_100000739	F060933	N/A	MDKVIIGAILLIQSLQTESFKNKIIDVCLTISTGMGVYFTLPFQISTNFYAQEIFRSITSIFTAVVILVASLFIRRWWSKRFK
Ga0196883_100000740	F036720	N/A	MDSIYVTNYFTNGIESSFILAAFFFLLLAFVTSKWFQFTIRDIESERTPLEVSWEFWWLDNYNSVISFFLMCFPIIVFTEDLVHWLGLNFLPDSMKTENPMYIYYIFGLSFGWVLEMILKKAKLIRNAQK
Ga0196883_100000741	F068898	N/A	MIASKAEIKALAFSNTFDMNAVKDNLIQLVEWEQVLSLFGADFYDDVVANPASYTTLIDTYLKPYIAYNVKAYLSKANHIKTGNKGAQTAQGSNEQIANVEFAKREAMNMATKYKRQMITYLDNTKPTLWKGEPKDDQIINKIIII
Ga0196883_100000742	F097404	N/A	VQKKIKNHPRKSQQSSFQVTNNVIQLPDYTDKQKIVTKQGLRIVSTVDNNLFPQKVSKLAKESSTLKAVINSFSEYVSYGALLTENMQLERKLTKDLNKYYNWFELSKRVAKDRRTYGYGFIEAIRKGSEVFVYHLDASQVRFMEYFGEKPEAVAISKDWNDTRIRPIERTLYPNYDEDGRTIIPIMEYESGMIDYPLPMWSGAFFDAQVESLIGQYNANQFENGVTLSSILMFDFGDTTDANGDAEKGLARQKQKLESQLKGTSQGRSGKSLIVPKSGDVEAPEYITYPMQKEGSFIELQKLVENNIVKACSWFRSLAGLESAGTLGNNQQLRNEWELAERLIRNEQDIIMEALQKAFKGTAYEGEVSFNNQSPMNVVNDLAAITVLLEKKDIIGKAAVYELLMMMGMDDEQAKTIVGNDSE
Ga0196883_100000743	F022895	N/A	MAANLSLAAVAGSNCPRTAGVKELYTIPVADITSITLGSDHDITDIVFASAGVGFGKINFKRGECEVTEAMERSNQVEVNFAVANPTSTQRKELQAIKDSCEQYMVARLYDGDRLLFIGYDEEFADEAFAAFMSAESTSGRAKADDNLFSFTMMAEQGEFLRVLSGISGATVPATTVPAIVAELVAATSV
Ga0196883_10000076	F076041	AGCAG	MAIALTTQPTTDGLYSAYLPVKFVATETTNDPAYLEFELKTQAGASIPNVPKYRALNVNNTFTFDASNYLKSILNVFTTQGYSTTAIEHLDDLYGKYEVEVTDPINSLTALTSNEFYAFANIDGLRYSNDQTANDGINRKGMLYGSELFNGSFAPKYQGAYDRCVVFAQSPEISIVTYDADKPNQYTTPKQFAEIDISSWTNRLISVPLNRTFLATNALVPPSSTPLSKYAGFKASHASLGDMYYYVEDRCKVNEFMFINRYGVKENIKFETYDYESVKTSSESYLVGGYTHTGNTNFFNTSANNVKVNQSIVEDYEVRGNFFTSRHKGELQDFVSSPLQWVVDNGELRPINVLDGSFKLVEKSRGIDFNFKYRYAQTKPSFK
Ga0196883_10000078	F101256	AGGA	MSQLGDFLKKAIEEEMEFNKRLASGESVATLREEIKDEHLLIYGVDYWDEINNGVPSGTLVDIEDLRSWVNAKSQRYGGTFPPITAIQRRIYAKGSSTPKEKLDIIPKVIKKNQAEITRQAENYVTNFLKLR