Scaffold Ga0232641_1069033

Overview

Basic Information

• Taxon OID: 3300021979
• Scaffold ID: Ga0232641_1069033
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS926 _150kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1347
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Hyphobacterium → unclassified Hyphobacterium → Hyphobacterium sp. CCMP332 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Hafa Adai vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 16.96131294
  • Long. (^o): 144.8678188
  • Depth (m): 3277

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0232641_10690334	F016410	N/A	MRKFSSKKEQLEWADKLLRKLSDKNTGGVTPIIKKMITENYIGRLKK
Ga0232641_10690335	F010920	GGAG	MSEIKTYDVLISYPIKVGAESKEHVKEILMASPLLRDAADLTLKITEVKDG
Ga0232641_10690336	F067830	GGAGG	MDKGKLTILDEIDGKTLAYRNKPSIELYHNTKEVGFSEFSYSWEEIITIGKILEELLEKDLVNVT