Scaffold Ga0232641_1007498

Overview

Basic Information

• Taxon OID: 3300021979
• Scaffold ID: Ga0232641_1007498
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS926 _150kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4011
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Hafa Adai vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 16.96131294
  • Long. (^o): 144.8678188
  • Depth (m): 3277

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003135	Metagenome / Metatranscriptome	505	Y
F093716	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0232641_10074986	F093716	N/A	MEKNDLLKRIEKLEEDSHPPVSWKIKIENIIKRVDELTKLYGEIITNLMKQRK
Ga0232641_10074987	F003135	GGA	VDPIGIIETLGIPVAVAIGLGYALMYLIKFITKDVTADIKNLYNIVVKLIDSNREAKDEVKKTMTGMNVIKDIMIKLFRNGKK