Scaffold Ga0232646_1166891

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0232646_1166891

Scaffold Ga0232646_1166891

Overview

Basic Information
Taxon OID	3300021978 Open in IMG/M
Scaffold ID	Ga0232646_1166891 Open in IMG/M
Source Dataset Name	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	743
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location Name	Perseverance vent field water column
Coordinates	Lat. (^o)	15.47990499	Long. (^o)	144.50763029	Alt. (m)		Depth (m)	3625
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001487	Metagenome	686	Y
F005131	Metagenome	411	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0232646_11668912	F005131	N/A	MKDIKKKLVKQVKRSRPSLAAEIKDMPMKDFRALWFVVQQGLKIKRKH
Ga0232646_11668913	F001487	GAG	MKKFTIEVKNASGPQLQTIGLELKIMSNAWTKFGPRIRI

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