Scaffold Ga0232646_1003752

Overview

Basic Information

• Taxon OID: 3300021978
• Scaffold ID: Ga0232646_1003752
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6608
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Perseverance vent field water column
• Coordinates
  • Lat. (^o): 15.47990499
  • Long. (^o): 144.50763029
  • Depth (m): 3625

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010876	Metagenome / Metatranscriptome	298	Y
F021856	Metagenome / Metatranscriptome	217	Y
F023623	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0232646_10037526	F023623	AGGA	MKIDFTTGKVYYPDEAEELKESLEEMKITESMGIGTGVEKEALFQKTRHRGLPYGRLKYLLYCFLLMVDGLIGIMSFGQTQSIMAQKYLLSKWIMEDDNGDR
Ga0232646_10037527	F010876	GGAGG	METDRSAVGFNSSPLYRFILQEGKFKGVEFYFKNVELDHKHTPGEFDIVFGYEIIGGNYRDNGYPSDKEYLNRAVTEKSEEQFQVEIGKILRNLLILNDPRVILHKGKLL
Ga0232646_10037529	F021856	N/A	MTEKKLIKLFKKSADKLAKKSKNNSTAIHTMGGLGEIEHQRMCPFRSIPFEDCPLCILESLDKL