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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021978 Open in IMG/M |
| Scaffold ID | Ga0232646_1003696 Open in IMG/M |
| Source Dataset Name | Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmer |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Marine Biological Laboratory |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6674 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (78.57%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Perseverance vent field water column | |||||||
| Coordinates | Lat. (o) | 15.47990499 | Long. (o) | 144.50763029 | Alt. (m) | Depth (m) | 3625 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005524 | Metagenome | 398 | Y |
| F024648 | Metagenome | 205 | Y |
| F029601 | Metagenome | 188 | Y |
| F039677 | Metagenome | 163 | Y |
| F081216 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0232646_100369612 | F005524 | GAG | MDIGDKVQHFSTGSIGTVIDSSYEVETPFQQMCVQWEDDKAPYKDSWERLEALSIIPHIPYDFNIND |
| Ga0232646_100369613 | F024648 | AGGA | MCEYHLYPGDMFRTKAGLGLIIEKSGGYFTYSTVADDQRKPCRTIETKRFYGYCDDMSHGQVLEVILVPNRKYRRKRK |
| Ga0232646_100369620 | F029601 | N/A | MMKVGDLVRFDAPDDVFHGKKGIIVRHVESDIYRQGSHYEVLTFCGFTIVALDFEIHRLENDFK |
| Ga0232646_10036963 | F039677 | GGA | MKIGDLVRYCAYPDDGRLGIVMSEVFDNRPTWEDEYPAVHVLTRHQHTGEEGMWTWHLEDIEVVSANR |
| Ga0232646_10036969 | F081216 | N/A | MDFQVGDLITLKHHRGNPNAPAPLAIVVDLEALVFNRIMIQHRGTSGPEMAAPEHWIVVSRNETR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |