NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232646_1003696

Scaffold Ga0232646_1003696


Overview

Basic Information
Taxon OID3300021978 Open in IMG/M
Scaffold IDGa0232646_1003696 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6674
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NamePerseverance vent field water column
CoordinatesLat. (o)15.47990499Long. (o)144.50763029Alt. (m)Depth (m)3625
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005524Metagenome398Y
F024648Metagenome205Y
F029601Metagenome188Y
F039677Metagenome163Y
F081216Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0232646_100369612F005524GAGMDIGDKVQHFSTGSIGTVIDSSYEVETPFQQMCVQWEDDKAPYKDSWERLEALSIIPHIPYDFNIND
Ga0232646_100369613F024648AGGAMCEYHLYPGDMFRTKAGLGLIIEKSGGYFTYSTVADDQRKPCRTIETKRFYGYCDDMSHGQVLEVILVPNRKYRRKRK
Ga0232646_100369620F029601N/AMMKVGDLVRFDAPDDVFHGKKGIIVRHVESDIYRQGSHYEVLTFCGFTIVALDFEIHRLENDFK
Ga0232646_10036963F039677GGAMKIGDLVRYCAYPDDGRLGIVMSEVFDNRPTWEDEYPAVHVLTRHQHTGEEGMWTWHLEDIEVVSANR
Ga0232646_10036969F081216N/AMDFQVGDLITLKHHRGNPNAPAPLAIVVDLEALVFNRIMIQHRGTSGPEMAAPEHWIVVSRNETR

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