Scaffold Ga0232639_1078810

Overview

Basic Information

• Taxon OID: 3300021977
• Scaffold ID: Ga0232639_1078810
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS925 _150kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1248
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Hafa Adai vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 16.96173128
  • Long. (^o): 144.86920936
  • Depth (m): 3278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002150	Metagenome	589	Y
F025299	Metagenome / Metatranscriptome	202	N
F045147	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0232639_10788101	F002150	N/A	LVSLTAAQIGVGVARRGKKEVGELYQRKLGYNFVDLITKLVLFYSIAFLIAKYMEAVIYFQGGMATIAGFFGIKISQADQLPRQWVELFVDVNQKTYTATPTGAGQFNPPGWDKPYDYGSVQHQEAEPYLFPQKEVKYKFWDLINAIVVFYIGWEAYKYYDNANKDPDKKVDFLTLAIFSLLMLAVGVLSFSKFLGRFSFNRFQEENK
Ga0232639_10788102	F025299	AGG	MIIEEIPFFVEFVITGIVLGFGYGFTRLFLNHAKDKNKIRRSERKAKESNGLEDELDSYINNAPQIAQKIQAELTYLKENNATPEQMKSLESKLELLNKVQQYEPLIKMIGKPALKKIMSIIDRV
Ga0232639_10788103	F045147	N/A	FQIKVNTSSGSGTYQAGIVPLFCYFSAAVPKTWTISSVLLHIHADLAHAFPIFRDEDNMNMLDTGIGV