NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232639_1070340

Scaffold Ga0232639_1070340


Overview

Basic Information
Taxon OID3300021977 Open in IMG/M
Scaffold IDGa0232639_1070340 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS925 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1323
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameHafa Adai vent field, Mariana back arc basin
CoordinatesLat. (o)16.96173128Long. (o)144.86920936Alt. (m)Depth (m)3278
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002150Metagenome589Y
F025299Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0232639_10703402F002150AGGAGMVSLTAAQVGVGVARKGKEKVGELYQEKFGYNFVDLVTKLALFYIVAFLIAKYMEAVIYFQGGLATIAGFFGIKFAQADQLPKQWVELFVDTNQQTFTSTPTATGQFNPPGWDKPYDYGSVQHQEAEPYMFPQKEVKYKFWDLINAIVIFYIGWEAYKYYDNASKDPNKKVDLLTLAIFSLLMLAVGVLSFSKFLGRFSFNRFQEENK
Ga0232639_10703403F025299AGGMILEEIPFFTEFILLGIVLGFGYGFTKLFLNHARDKNKVRRSERKAKEANGLEDELDSYLNNAPQIAQKIQAELDYLKKNDATPEQMKSLESKLELLNKVQQYEIPLKLIGKPLFKKIVSIIDKVGV
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