NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232635_1089760

Scaffold Ga0232635_1089760


Overview

Basic Information
Taxon OID3300021973 Open in IMG/M
Scaffold IDGa0232635_1089760 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Alice_FS923 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameAlice Springs vent field, Mariana back arc basin
CoordinatesLat. (o)18.210325Long. (o)144.707309Alt. (m)Depth (m)3610
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048569Metagenome148Y
F073663Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0232635_10897602F048569GAGGMSNKYDSSEHIKVLAELLTLQTIVSETMAKIKVLSKKLKTINELKKADDEIPF
Ga0232635_10897604F073663N/ADHVYLEQSIDMCKKMKLIISETDILATTSKGIVVSNQDIINHLATLKNKTQTRDQKILARKVYDQAQK

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