Scaffold Ga0232635_1011816

Overview

Basic Information

• Taxon OID: 3300021973
• Scaffold ID: Ga0232635_1011816
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Alice_FS923 _150kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1919
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Alice Springs vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 18.210325
  • Long. (^o): 144.707309
  • Depth (m): 3610

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052875	Metagenome	142	N
F083241	Metagenome	113	N
F092722	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0232635_10118161	F052875	GAGG	VELAAVQQLVAAVGPIGAMLVIGAWWFATHQEKRSGVPDQVARMKARDAIIQISADVAHMKKDIADIKADGKTTSTTLMQHMAQQHTRGR
Ga0232635_10118162	F092722	AGGGGG	MYFVVGDIRFPITFPANWANIGVPNNEAVSQPVQIPTQVVGYKTTK
Ga0232635_10118165	F083241	AGGAG	MTPWATLQYLEIVEPIGDAFTDWEAYASAWENSAAKLMPVGHDDEYKMRYWMAGAPTPGFYMQISTPTFSPDATSVPAPVSFELFTTGRRSIDVRTA