NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0227318_10168543

Scaffold Ga0227318_10168543


Overview

Basic Information
Taxon OID3300021971 Open in IMG/M
Scaffold IDGa0227318_10168543 Open in IMG/M
Source Dataset NameFood waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed2 spades
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)834
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameUniversity of Toronto, Toronto, Ontario, Canada
CoordinatesLat. (o)43.6629Long. (o)-79.3957Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028765Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0227318_101685431F028765N/AKRNEMLSCELSSCHETISNLRSINDDLNAKLEIASKSTSCVENVVTCTRCKDINIDAYSEHLACISKLNEEVASLNAQLKTSKSDFDKLKFARDAYTIGRHPSIKDGLGFKREAKNLTSHKAPIPAKEKGKAPMATSAKKNHAFLYHDRKNSRNAFRSYDAFDSHAYDSYAMTASSSHVVHDRKVGRRNVIHNMPRRNVVNAHRKVHGPSTIYHALNASFAICRKDRKIVARKLGAKCKGDKTCIWVPKDICTNLVGPNKSWVPKSQA

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