Scaffold Ga0227318_10084205

Overview

Basic Information

• Taxon OID: 3300021971
• Scaffold ID: Ga0227318_10084205
• Source Dataset Name: Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed2 spades
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1112
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: University of Toronto, Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.6629
  • Long. (^o): -79.3957

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009131	Metagenome / Metatranscriptome	322	Y
F032187	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0227318_100842052	F009131	GAG	LANHLEISVKELRASQRKCYVKSIECVKKIKSGFASVGAFSSEENFSRGNPEGPMEWISHEAEAFEEILNSRGDICAFSGARGIATVLEKKGCEHVKSLAQSEATLFSEDIKDPSAEASMIGGKFFTDIWDNGGREMAQEIIQKSEKGIHDARKVAEAAEKSTEPEGQIGIN
Ga0227318_100842053	F032187	N/A	LFAVCNSNIAVSSPPSEPAEASPGPHPKGDDEIRKMAEAIMDKVVDQLLNEAAEIVLKED