Scaffold Ga0226662_10235029

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0226662_10235029

Scaffold Ga0226662_10235029

Overview

Basic Information
Taxon OID	3300021966 Open in IMG/M
Scaffold ID	Ga0226662_10235029 Open in IMG/M
Source Dataset Name	Food waste microbial community from Durham, Ontario, Canada - FW2 spades
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	670
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	Durham, Ontario, Canada
Coordinates	Lat. (^o)	43.6629	Long. (^o)	-79.3957	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018877	Metagenome / Metatranscriptome	232	Y
F099086	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0226662_102350291	F018877	N/A	DTKDPSAEASIIGGKFFTDIWDNGGREMAGEIIRRSEKGIHDAREVAEAAEKSAEAEGQLGIN
Ga0226662_102350292	F099086	AGG	LFAICNSNVAVSCLTSDPAKASSGPQPKGDDEIKKMAEDIMDEVVNRLLNEAAEVVLRED

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