NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226662_10217284

Scaffold Ga0226662_10217284


Overview

Basic Information
Taxon OID3300021966 Open in IMG/M
Scaffold IDGa0226662_10217284 Open in IMG/M
Source Dataset NameFood waste microbial community from Durham, Ontario, Canada - FW2 spades
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)696
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameDurham, Ontario, Canada
CoordinatesLat. (o)43.6629Long. (o)-79.3957Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081962Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0226662_102172842F081962AGGVEQLYTGSQRALAVVALSNEVPTHLADVLRRLAVLPQRFQELRRASARAGAIAALSRAKAFLPELDPADIALGYPSLKEDGTPFDQKDFAACVKSVRPVATLIGNDTDLTKYQPGYDSENQRIPTPRYEAISLIPPTRKHTFAPEVDPAG

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