NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10632912

Scaffold Ga0222719_10632912


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10632912 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)616
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017490Metagenome / Metatranscriptome240Y
F034192Metagenome / Metatranscriptome175Y
F059020Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_106329121F034192N/AVKQNLEIDSQSYKDLSPLMKEAVSDVFKLIEKETGDIITRFENAVNKVAEFHNINLERFNDYFDKEILEQLGEK
Ga0222719_106329122F017490AGGAGMAYQGSFKLKGSSTTAGSPISASNFGRAHFVRVQTQAAANTVTVKEGSDVIGTIILVIAGDSVVIEKDEAHTVETTGNAVGSAVSSSR
Ga0222719_106329123F059020AGCAGMTISTTKLVDDSFKIIVNANGVGSETDQTLVDVVNSNNAS
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Institute for Fundamental Biomedical Research
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