Scaffold Ga0222719_10367701

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10367701
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 906
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008684	Metagenome	329	Y
F021440	Metagenome / Metatranscriptome	219	Y
F027481	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_103677011	F021440	AGGAG	MSKKPTHFAVEDITFYGMDEDNEIITNDKGEEVKYRLKYGFRYKPLEYLCEDMVAEQLEIINETVPYNDIEEANKXVIKTLN
Ga0222719_103677012	F008684	GAGG	MSDKNFELACELADDLYFKFIDSLHDDIANEYVVADEDNIGCTKNTEKGSELYWDIENTIKNTLDKKEGVIQXKIKTKNI
Ga0222719_103677013	F027481	N/A	MKNKNKKYLVKFNCVIGEYEHLTSYVFDKQMSEYGYCKKFWGLKKKNELKTNVFWDDFMENAIEVYSETE