Scaffold Ga0222719_10165744

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10165744
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1544
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061813	Metagenome	131	N
F063185	Metagenome	130	Y
F073281	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_101657441	F073281	GGAG	MRPKTICHPEALADWRANDEDAHSYLATVQEQINIGRTQDASIRQHSTHNNEVPKKQTELEGLLARRLKDAIEQETRKRGEVRKER
Ga0222719_101657443	F061813	GGAGG	MAITTVSNENKTRVDYLVYKQVTEVLVLVKQANETLNDTGDIDSDSLDNASSHLKCAIDMLDHYLRAHA
Ga0222719_101657446	F063185	N/A	GSVLWWFIHKTGEVTVKYKDGYAFDYDDEDEQHEFIVTQERTILVQYTVEASSLSNAVAQIESGDYSGVIDEDASHADTDKKGRIISVRVNDDD