Scaffold Ga0222719_10120848

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10120848
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1887
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F027835	Metagenome / Metatranscriptome	193	N
F048249	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_101208481	F020115	N/A	MTYEQFELLRQWADRVANTANDTDTNIRSIDLVHDIAGILAN
Ga0222719_101208483	F018534	N/A	MALPTLTDFLTSWDKLTVIGMTPERHDSIMTLAPVGLNGVKVAIEYRHQISRSSGVCSTIAYLVAYDSNGNRCTLRNQTYGCFGDEEKQFHQWFATKIAGAVELDARRRTELNRAVDEAL
Ga0222719_101208484	F048249	N/A	MKTSIFNTRIIRKGSQVLYRGSWGRDGQRIAEVIAIEQTQGPNEKYGDEVDAVGLDDHYVLTLNNGHWCYSYQVDGLVQLPDTESVTK
Ga0222719_101208485	F027835	GGA	MKTQQHIDALYERMKTAGGFECALIMAYMKADGGNAKLLEDAFKGTRFDLTPRPKYNHGVEVLRAAAYWSGNRDEYLNDDKTAYQIIDEYIKENEQ