Scaffold Ga0222719_10099480

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10099480
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2127
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F020816	Metagenome / Metatranscriptome	222	N
F035272	Metagenome / Metatranscriptome	172	N
F067760	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_100994802	F067760	N/A	MRVRRIDMFIMRKYGDYCDEALRYKEFQKTFQAWKDDNIISLVKEYKEYRRILRYGS
Ga0222719_100994805	F004856	GGAGG	MSDWIEGTKPKYIEARYSAYLSWDLEELGIDWDEVEDWDLQRADLEITFKDGTKQNYENWQDLDIDYKHNFEEVLILDEGWDKVEGLNXWKNINVFMIDQSMNK
Ga0222719_100994806	F020816	AGCAG	MMMGDNMKVYEITVSTTVQIDSVDDYAESKEHAIDIMWDRWDVYEDDLRITNVKVWEEDDEXLDRRN
Ga0222719_100994808	F035272	AGGAGG	MMTYKQWCDFRELLNILHIEVESKLCDVKVEEAFDDVWDMVDEIDTTQEITXTNINNFTM