Scaffold Ga0222719_10079086

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10079086
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2439
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F012964	Metagenome	275	Y
F075993	Metagenome / Metatranscriptome	118	Y
F101071	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_100790861	F075993	N/A	VANRRISEFPAFNGADIDEQDLLTLVHVFEVDPTLRNKKITFTQFKEYLNIYYAPASGATFSGNVTISGNLSVSGSSSFNTIT
Ga0222719_100790862	F012964	GGA	MEEQIPPSQTPMPQTPEGQITPEMLVELKARARELAIQQTIAQQQAISQQQPQVVYVRRNLTVAEVLLVILLSCGIVTGIQWSWNIATNVLPRIEIKLR
Ga0222719_100790863	F000973	AGGA	MQHGLRKSLEDIAHELKGIKNILGSMWHSRYKDGETDVTNPEAFADEYISTEECGRRLGVSDQTIRNWIAIGRKTPEKGWVEGIHYVNVSPDVHRKAVLRIPWNMLIQSFAKNEGLDLRNLRPRYDLYKKNPELSK
Ga0222719_100790866	F101071	N/A	MAEKGVRGIAARNEGAELITNQDLVLAANELLGGITLDVASSKVANEYVGAENYYTPMDDGLNAQQWYGNCYLFPPAGAYFWDQKNEKWKMTRASSLTLTSSHAVWFRRMYHAWLAKEIEQGLYFSNCPDMIRYEPKIFKFPMCILKTAPYLLCHKDGEVNRKPTCTSFVVYLPPQDSSSDA