Scaffold Ga0222719_10072002

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10072002
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2583
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F014121	Metagenome / Metatranscriptome	265	Y
F017818	Metagenome / Metatranscriptome	238	Y
F018913	Metagenome / Metatranscriptome	232	Y
F043358	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_100720022	F017818	N/A	MNKDAYYDWIEENDTYPEHSHKWIVGLYNKYEGVEGFHRYFGVFETKEEAKVFAANYREKYTKPGFISSVRVFPLCEVL
Ga0222719_100720023	F043358	GAG	MKVYDYRIVEKLNVDTMKPYFIIQKYNLLTQEYNLHSNARIQTLEEAQEAIRLIRKYKEPVYHYVK
Ga0222719_100720025	F018913	N/A	MTNQQRAEELLKVFWESQAHNPAWLLQETLQHLRKQLSGTNKVDFTDELDVMFNAGWDECLKEIDAICDELELL
Ga0222719_100720027	F014121	AGGA	MTNTAYQIWETFKAELTQPATDDMKEALASSIRVISSIIHRDGVLEDEPWHLHIAQELNEIAGDVEAL
Ga0222719_100720029	F008943	GGAGG	MKFDWFIILTIPVCVIVAAGTLTYDAQQQRVTFQQTYNKNLECRQSLKGQTMARVNEICGPV