Scaffold Ga0222719_10048428

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10048428
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3248
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_100484281	F038657	GGAG	MSILGGMSNTENKQQIYLGFKTMGQKFYANGETEVDVKYLQLDPETFKSGWGRYTKADGFEYKWDSKFTVPEKRPSDEWKRAFSCWVMPHGADHPYLWQRFSFAETSAFDKLLDLFWHDVANNVGKLPVVEFTGSKIIQVGMGSSSELSFKFSKWADRFDGNVVPDWYIDPDASADDDFVSPN
Ga0222719_100484284	F093807	GAG	MTQYKDIVELQRLKLNKQKDEWYIHVNNGAGYTEVKQGNTLTITYHDTGKKEIIVNAN
Ga0222719_100484285	F013088	GGAG	MDEVIKKALWIPEELHKDIKIFAIQNNLTIEQASQMLIKLGMVTYEAEKGYDTI