NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10043608

Scaffold Ga0222719_10043608


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10043608 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3449
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F040073Metagenome162Y
F058089Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_100436082F058089N/AMSTQPEDQFTLLYEDGKRKVLHEFQCIGTDEIVDEFINFLRGVGHLELNIIERMYEISKQYLVLYQGEPAIRLPIQQDELEEVE
Ga0222719_100436084F040073N/AMLKFEMSPEDMFWQEKMIRSINDCSSMSELKEMATLLTKIATQRQVAIKGLVNDAMELMQENYSHKLPTNND
Ga0222719_100436086F002333N/AMSTQLQQQELNAAQSLIYTRTNIGRAFQDFDDTEIAGIYLRDDNCLVVRRDGTEQTYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWHYSHALGHLTSNATLQNHWADKFIHISDPAKLTALLQSDQTDIGHLVAPDGMRLPNRPIDMDSELDDGSEQKPVLSEPTCSCGSFQRQLSNLSFFQEEIEGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWWYAPPKDAVSDGRFVLLYTNSGAQAPLGHWRTYKPNEVFTQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKK
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