Scaffold Ga0222719_10041436

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10041436
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3556
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006528	Metagenome / Metatranscriptome	371	Y
F016274	Metagenome	248	Y
F064509	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_100414362	F064509	AGGA	MTDKTNIYGDYRVCCKCGMKADVVEKSNDLCASCYFKYHTNTTLEEYEKRNKEIDIERERKRNEKS
Ga0222719_100414364	F006528	N/A	VKEKIKLSTNIDKEKLAIQTFKNIIEGSRSINGVTWNRIKNLKPKEQILCLKRKI
Ga0222719_100414365	F016274	AGG	MRNKFGLPLVYDFNIALRDKRRIRNLEYMKWNCPKGWESLWSNKLDQLKKNISERKNKTL