Scaffold Ga0222719

Basic Information
Taxon OID	3300021964 Open in IMG/M
Scaffold ID	Ga0222719_10019832 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021964 Open in IMG/M

Scaffold ID

Ga0222719_10019832 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5377
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (23.81%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5377

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (23.81%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.495	Long. (^o)	-122.0933	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.495

Long. (^o)

-122.0933

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F013505	Metagenome / Metatranscriptome	270	Y
F036146	Metagenome / Metatranscriptome	170	Y
F059774	Metagenome / Metatranscriptome	133	N
F085396	Metagenome / Metatranscriptome	111	Y
F091611	Metagenome	107	N
F098941	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_1001983213	F005382	N/A	MGRPLRGPLSPSSLPAMAPPMTKTDKIKSFIFNAGSSIVNVRFVKADGSVRSLCFNPRDTKEIKGTGTATKKPSIIRCRDFTIARTAGEGAWRSFDCERVLSIKANGQTLSF
Ga0222719_1001983215	F085396	N/A	MTHTPFLTRSQRAIARMVKDSGYSLSSYSRDDRSAARSKLLALVHKAPDYAPSHQPAKRTKAFFLTLADSMQDDIWRFL
Ga0222719_1001983219	F013505	AGG	MLYCFLSSDAPLMKHYPSYEARLEADRQAQHSGYGIQQYLCADGSRKWEAYGWERLSELSIHTTSYGIFDHKWQAEQFFNNIINA
Ga0222719_100198322	F036146	GAGG	MTPCRTWKVTTSEGKTIALGAISPKQAEHFLLAMRPDIKIALIEEIEPLPEPSPDQWP
Ga0222719_1001983220	F091611	N/A	MPYSLIVDDEWGVPYALKTFDSLQDVHDEIRALDEALDNVGPGAAYAIRCLIDQLWQIVHEAEEEPEALPDRPAF
Ga0222719_100198325	F098941	N/A	MEGIVRGMRARACMSFRFKPMTTTAPKFYHWGEKLSAFTSDNRLVMSFGSPITHIPFNIAELQGFVCTLEQAIDDEPNAKQRIALGAIKIIFEASLKIAKRDHEEMVANAPVGADLEEYMLNYANAVKNGEL
Ga0222719_100198326	F059774	GGAG	MIYGEYENDPELDWERPQRLNRQLSLQQLESRLELWKQKHEDMCLKLYRAATGI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222719_10019832

Overview

Ecosystem & Geography

Associated Families

Sequences