Scaffold Ga0222719_10017144

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10017144
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5829
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007947	Metagenome / Metatranscriptome	342	Y
F024295	Metagenome / Metatranscriptome	206	Y
F035971	Metagenome / Metatranscriptome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_1001714415	F007947	GAG	MLDCHTILCLQNQMPDVGMDDLFIIGYLAIGTAIVIYLVMDALKEN
Ga0222719_1001714419	F035971	GGAG	MGNLTWNEVAQTETDKRYMDMYGCTQLDMEDMLHEDMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSNIGLTSTTNTLTN
Ga0222719_100171449	F024295	AGGAG	MKYIVELLLTYEVDAPDMRQAQITAYKRAIDLCDSEDDLFKHIDKDMKCVSSMVRDVSVIEEEIDT