NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10016351

Scaffold Ga0222719_10016351


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10016351 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5990
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001222Metagenome / Metatranscriptome743Y
F003188Metagenome / Metatranscriptome502Y
F020020Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_100163516F020020AGGAMKKYIVEFTLKDGTKEEVEFVTDRLEWSIDQWSRNRYVIDHKVISEGSNNSKQMLLG
Ga0222719_100163518F001222N/AMNNLEYLVRNILSEAAKINFAGHSFVLKVDTNEDPQKKGVKVQFLPTEFGAITPTEQNDIAIELEKRLEQGLDLYDMKVERDRNLKDKTIIGFFIYIEYFDRIIRKALSGQNPSNDGDSNPEV
Ga0222719_100163519F003188N/AMVDPKKRIRQTLFSIHPLSYRIKVKSPDKETMDKKLFIEVIKQLRQIEERRDFMHEEIGMDMTAYEDQFFLVIENLMKMHFSKEQLALIQMYLYQLVPDKEWDGTITVEKNKKEETVPFKTPEDVWSVIKKF
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