NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10011983

Scaffold Ga0222719_10011983


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10011983 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7123
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004278Metagenome445Y
F053232Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_100119834F053232GAGGMNKFWLSVQGYWSCISWLPAALLKFIWEESPDLKFWKQHTNFYDHIWYAERVNGRIAMLVLSFLLIWCLIHDIKLNEILF
Ga0222719_100119837F004278N/AMIPTLYNDIIQAIIKWWKKTWFEAKLKARLTMIEWENQWEAERELEEQNKPIYIEHEIDPELQTGESRKLGGAMELRAPWYNDAIQPERQDGVQETTSMDDCL

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